| EbayesThresh | Empirical Bayes Thresholding and Related Methods Bernard W. Silverman , Ludger Evers , Kan Xu , Peter Carbonetto , Matthew Stephens |
| MAPITR | MArginal ePIstasis Test for Regions Michael Turchin , Gregory Darnell , Lorin Crawford , Sohini Ramachandran , Peter Carbonetto |
| ashr | Methods for Adaptive Shrinkage, using Empirical Bayes Matthew Stephens , Peter Carbonetto , Chaoxing Dai , David Gerard , Mengyin Lu , Lei Sun , Jason Willwerscheid , Nan Xiao , Mazon Zeng |
| bmass | Bayesian Multivariate Analysis of Summary Statistics Michael Turchin , Matthew Stephens , Peter Carbonetto |
| ebnm | Solve the Empirical Bayes Normal Means Problem Jason Willwerscheid , Matthew Stephens , Peter Carbonetto , Andrew Goldstein , Yusha Liu |
| fastTopics | Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data Peter Carbonetto , Kevin Luo , Kushal Dey , Joyce Hsiao , Abhishek Sarkar , Anthony Hung , Xihui Lin , Paul C. Boutros , Minzhe Wang , Tracy Ke , Matthew Stephens |
| fastglmpca | Fast Algorithms for Generalized Principal Component Analysis Eric Weine , Peter Carbonetto , Matthew Stephens |
| flashier | Empirical Bayes Matrix Factorization Jason Willwerscheid , Peter Carbonetto , Wei Wang , Matthew Stephens , Eric Weine , Gao Wang |
| mashr | Multivariate Adaptive Shrinkage Matthew Stephens , Sarah Urbut , Gao Wang , Yuxin Zou , Yunqi Yang , Sam Roweis , David Hogg , Jo Bovy , Peter Carbonetto |
| mixsqp | Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions Youngseok Kim , Peter Carbonetto , Mihai Anitescu , Matthew Stephens , Jason Willwerscheid , Jean Morrison |
| susieR | Sum of Single Effects Linear Regression Gao Wang , Yuxin Zou , Kaiqian Zhang , Peter Carbonetto , Matthew Stephens |
| varbvs | Large-Scale Bayesian Variable Selection Using Variational Methods Peter Carbonetto , Matthew Stephens , David Gerard |
| workflowr | A Framework for Reproducible and Collaborative Data Science John Blischak , Peter Carbonetto , Matthew Stephens , Luke Zappia , Pierre Formont , Tim Trice , Jiaxiang Li , Michael J. Kane , Anh Tran , Sydney Purdue , Giorgio Comai , Zaynaib Giwa , Xiongbing Jin , Yihui Xie |